University of Worcester Worcester Research and Publications

Hotspot siRNA Confers Plant Resistance against Viral Infection

Mohamed, A., Jin, Zhenhui, Osman, T., Shi, N., Tör, M. ORCID:, Jackson, S. and Hong, Yiguo (2022) Hotspot siRNA Confers Plant Resistance against Viral Infection. Biology, 11 (5). p. 714. ISSN 2079-7737

Text (Open Access article)
biology-11-00714-v2.pdf - Published Version
Available under License Creative Commons Attribution.

Download (3MB) | Preview


A hallmark of antiviral RNA interference (RNAi) is the production of viral small interfering RNA (vsiRNA). Profiling of vsiRNAs indicates that certain regions of viral RNA genome or transcribed viral RNA, dubbed vsiRNA hotspots, are more prone to RNAi-mediated cleavage for vsiRNA biogenesis. However, the biological relevance of hotspot vsiRNAs to the host innate defence against pathogens remains to be elucidated. Here, we show that direct targeting a hotspot by a synthetic vsiRNA confers host resistance to virus infection. Using Northern blotting and RNAseq, we obtained a profile of vsiRNAs of the African cassava mosaic virus (ACMV), a single-stranded DNA virus. Sense and anti-sense strands of small RNAs corresponding to a hotspot and a coldspot vsiRNA were synthesised. Co-inoculation of Nicotiana benthamiana with the double-stranded hotspot siRNA protected plants from ACMV infection, where viral DNA replication and accumulation of viral mRNA were undetectable. The sense or anti-sense strand of this hotspot vsiRNA, and the coldspot vsiRNA in both double-stranded and single-stranded formats possessed no activity in viral protection. We further demonstrated that the hotspot vsiRNA-mediated virus resistance had a threshold effect and required an active RDR6. These data show that hotspot vsiRNAs bear a functional significance on antiviral RNAi, suggesting that they may have the potential as an exogenous protection agent for controlling destructive viral diseases in plants.

Item Type: Article
Uncontrolled Discrete Keywords: ACMV, siRNA, RNAi, RDR6, antiviral defence, SERG
Divisions: College of Health, Life and Environmental Sciences > School of Science and the Environment
Related URLs:
Copyright Info: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (
Depositing User: Mahmut Tor
Date Deposited: 19 May 2022 10:12
Last Modified: 20 Oct 2022 14:58

Actions (login required)

View Item View Item
Worcester Research and Publications is powered by EPrints 3 which is developed by the School of Electronics and Computer Science at the University of Southampton. More information and software credits.